Semantic Processing Workflow Phases

Complete 8-Phase Processing Pipeline

graph TD
    subgraph "Phase 1: Semantic Data Understanding"
        P1A[Raw Mass Spectra] --> P1B[Zengeza Semantic Noise Reduction]
        P1B --> P1C[Understand Interference as Semantic Corruption]
        P1C --> P1D[Extract True Chemical Semantics]
    end
    
    subgraph "Phase 2: Specialized Semantic Analysis"
        P2A[Trebuchet Delegation] --> P2B[Lavoisier Molecular Semantics]
        P2B --> P2C[Pathway Semantic Networks]
        P2C --> P2D[Biological Meaning Extraction]
    end
    
    subgraph "Phase 3: Semantic Robustness Testing"
        P3A[Diggiden Adversarial Testing] --> P3B[Attack Semantic Understanding]
        P3B --> P3C[Validate Meaning Preservation]
        P3C --> P3D[Enhance Robustness if Needed]
    end
    
    subgraph "Phase 4: Dream-State Processing"
        P4A[Champagne Dream Networks] --> P4B[Novel Semantic Connections]
        P4B --> P4C[Creative Insight Generation]
        P4C --> P4D[Biological Plausibility Check]
    end
    
    subgraph "Phase 5: Expert Coordination"
        P5A[Diadochi Multi-Domain Experts] --> P5B[Cross-Domain Synthesis]
        P5B --> P5C[Expert Consensus Building]
        P5C --> P5D[Integrated Understanding]
    end
    
    subgraph "Phase 6: Paradigm Detection"
        P6A[Spectacular Paradigm Analysis] --> P6B[Current vs Proposed Paradigm]
        P6B --> P6C[Paradigm Shift Assessment]
        P6C --> P6D[Scientific Impact Evaluation]
    end
    
    subgraph "Phase 7: Context Validation"
        P7A[Nicotine Context Preservation] --> P7B[Semantic Drift Detection]
        P7B --> P7C[Objective Maintenance Check]
        P7C --> P7D[Focus Correction if Needed]
    end
    
    subgraph "Phase 8: Authenticity Validation"
        P8A[Pungwe Metacognitive Check] --> P8B[Self-Deception Detection]
        P8B --> P8C[Truth Synthesis]
        P8C --> P8D[Authentic Understanding Validation]
    end
    
    P1D --> P2A
    P2D --> P3A
    P3D --> P4A
    P4D --> P5A
    P5D --> P6A
    P6D --> P7A
    P7D --> P8A
    
    style P1B fill:#e1f5fe
    style P2B fill:#e8f5e8
    style P3B fill:#fff3e0
    style P4B fill:#f3e5f5
    style P5B fill:#fce4ec
    style P6B fill:#e0f2f1
    style P7B fill:#fff8e1
    style P8B fill:#f1f8e9

Semantic Processing Sequence Flow

sequenceDiagram
    participant Scientist as "👨‍🔬 Scientist"
    participant TRB as "🧠 experiment.trb<br/>Semantic Engine"
    participant V8 as "⚡ V8 Intelligence<br/>Network"
    participant External as "🌐 External Systems<br/>Lavoisier, R, APIs"
    participant FS as "👁️ experiment.fs<br/>Consciousness View"
    participant HRE as "📖 experiment.hre<br/>Decision Memory"
    
    Scientist->>TRB: "Understand diabetes through metabolomics"
    TRB->>V8: Initialize semantic processing network
    
    Note over V8: Zengeza: "Data contains semantic interference"
    V8->>FS: Update consciousness: "Semantic clarity 23%→89%"
    V8->>HRE: Log: "Noise patterns reveal instrument semantics"
    
    TRB->>External: Delegate specialized semantic analysis
    External->>TRB: Return molecular pathway semantics
    
    Note over V8: Diggiden: "Test semantic robustness"
    V8->>V8: Attack analysis with semantic spoofing
    V8->>TRB: "Meaning preserved under adversarial testing"
    
    Note over V8: Champagne: "Dream-state processing"
    V8->>V8: Generate novel semantic connections
    V8->>FS: Visualize creative insights network
    
    Note over V8: Spectacular: "Paradigm shift detection"
    V8->>HRE: Log: "Novel understanding challenges current paradigm"
    
    TRB->>Scientist: "Semantic understanding achieved: 94% confidence"
    TRB->>Scientist: "Novel insight: Temporal metabolomic signatures predict diabetes 6 months early"

File Interaction Architecture

graph TD
    subgraph "Four-File Semantic Orchestration"
        TRB[experiment.trb<br/>🧠 Cognitive Orchestrator<br/>Executes semantic reasoning]
        FS[experiment.fs<br/>👁️ System Consciousness<br/>Real-time semantic state]
        GHD[experiment.ghd<br/>🌐 Resource Network<br/>External semantic sources]
        HRE[experiment.hre<br/>📖 Decision Memory<br/>Semantic reasoning trail]
    end
    
    subgraph "Semantic Flow"
        TRB -->|reads dependencies| GHD
        TRB -->|logs decisions| HRE
        TRB -->|updates visualization| FS
        FS -->|provides feedback| TRB
        HRE -->|informs future reasoning| TRB
    end
    
    subgraph "External Semantic Processing"
        LAV[Lavoisier<br/>Mass Spec Semantics]
        RST[R Statistical<br/>Numerical Semantics]
        LIT[Literature APIs<br/>Knowledge Semantics]
        DB[Databases<br/>Reference Semantics]
    end
    
    TRB ↔ LAV
    TRB ↔ RST
    TRB ↔ LIT
    TRB ↔ DB